Efficient computation of all perfect repeats in genomic sequences of up to half a gigabyte, with a case study on the human genome

Basic local alignment search tool

Stephen F. Altschul, Warren Gish, Webb Miller et al. · Journal of Molecular Biology · 1990 · 92.8K citations

Bioinformatics, Engineering, Information Retrieval +10

Tandem repeats finder: a program to analyze DNA sequences

Gary Benson · Nucleic Acids Research · 1999 · 9.4K citations

REPuter: the manifold applications of repeat analysis on a genomic scale

Stefan Kurtz · Nucleic Acids Research · 2001 · 2.7K citations · Full text

Dna, Genetics, Genomics +25

Suffix Arrays: A New Method for On-Line String Searches

Udi Manber, Gene Myers · SIAM Journal on Computing · 1993 · 1.9K citations

Engineering, Information Retrieval, String-searching Algorithm +13

Ultraconserved Elements in the Human Genome

Gill Bejerano, Michael Pheasant, Igor V. Makunin et al. · Science · 2004 · 1.7K citations

Comparative Genomics, Genetics, Molecular Biology +18