Concepedia

Mitochondrial genomes reveal an explosive radiation of extinct and extant bears near the Miocene-Pliocene boundary

Johannes Krause, Tina Unger, Aline Noçon, Anna‐Sapfo Malaspinas, Sergios‐Orestis Kolokotronis, Mathias Stiller, Leopoldo Héctor Soibelzon, Helen F. Spriggs, Paul H. Dear, Adrian W. Briggs,

BMC Evolutionary Biology · 2008 · 292 citations · 65 references

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65

MUSCLE: multiple sequence alignment with high accuracy and high throughput

R. C. Edgar · Nucleic Acids Research · 2004 · 45.3K citations · Full text

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MrBayes 3: Bayesian phylogenetic inference under mixed models

Fredrik Ronquist, John P. Huelsenbeck · Bioinformatics · 2003 · 29.1K citations · Full text

, , +14

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

Alexandros Stamatakis · Bioinformatics · 2006 · 15.7K citations · Full text

Evolutionary trees from DNA sequences: A maximum likelihood approach

Joseph Felsenstein · Journal of Molecular Evolution · 1981 · 14.7K citations

, , +9

BEAST: Bayesian evolutionary analysis by sampling trees

Alexei J. Drummond, Andrew Rambaut · BMC Evolutionary Biology · 2007 · 13K citations · Full text