SIAM Journal on Discrete Mathematics · 1992 · 34 citations · 12 references
ComputingComputer ScienceMathematicsAlgorithmsCombinatoricsTheory Of ComputationComputational ComplexityGraph AlgorithmsGraph ColoringGraph TheoryPhylogenetic AnalysisPhylogenetic Tree ReconstructionNumerical TaxonomyTree AlgorithmsVertex Coloring
The problem of determining whether a vertex-colored graph can be triangulated without introducing edges between vertices of the same color is what is of interest here. This problem is known to be polynomially equivalent to a fundamental problem in numerical taxonomy called the perfect phylogeny problem, which is concerned with the inference of evolutionary history. This problem is also related to the problem of recognizing partial k-trees, a class of graphs that has received much attention recently. The problem in its general form is NP-complete and can be solved in $O( n^{k + 1} )$ time, where n is the number of vertices and k the number of colors. In this paper, a linear time algorithm for the case of 3-colored graphs is presented.
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The steiner problem in phylogeny is NP-complete
L. R. Foulds, Ron Graham · Advances in Applied Mathematics · 1982 · 434 citations
Efficient algorithms for inferring evolutionary trees
Dan Gusfield · Networks · 1991 · 424 citations
Life Sciences, Evolutionary Biology, Evolutionary Theory +10
A characterisation of rigid circuit graphs
Peter Buneman · Discrete Mathematics · 1974 · 323 citations