Systematic Biology · 1999 · 243 citations · 43 references
Life SciencesBiologyEvolutionary BiologyMolecular EvolutionPhylogeneticsSpeciationDivergence Time EstimationEvolutionary RelationshipsPhylogenetic AnalysisPhylogenetic InferencePhylogenetic PatternsPhylogenetic Tree ReconstructionMitochondrial Dna MarkersMitochondrial Dna PhylogeneticsMitochondrial Transfer Rna GenesParametric BootstrapPhylogenetic Character AnalysisPhylogenetic Diversification ModelsPhylogenetic Hypothesis TestingPhylogenetic Reconstruction Models
We examine phylogenetic relationships among anoles using mitochondrial DNA se- quences from the NADH dehydrogenase subunit 2 gene (ND2) andve transfer-RNA genes repre- senting 1,455 alignable base positions and 866 phylogenetically informative characters (parsimony criterion). We also present 16 morphological characters for phylogenetic analysis. Our analyses yielded poorly-supported nodes deep in the anole tree but many well-supported nodes for more recent phylogenetic divergences. We test the hypothesis that the major clades of anoles form a hard polytomy and present a general statistical framework for testing hypotheses of simultaneous branching of lineages by using molecular sequence data. Our results suggest that rapid diversi- �cation early in the evolutionary history of anoles explains why numerous researchers have had difculty reconstructing well-supported dichotomous phylogenetic trees for anoles. ( Anolis; mito- chondrial DNA; parametric bootstrap; permutation test; phylogeny; polytomy.)
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