Journal of Molluscan Studies · 2006 · 81 citations · 29 references
Saccostrea SpeciesGeneticsMorphological PlasticityZoological TaxonomyDna SequencesDna BarcodingPhylogenetic AnalysisPhylogeneticsMolecular EcologyMarine GenomicsMarine BiodiversityPhylogeny ComparisonMorphological EvidencePhylogenomicsMitochondrial-dna AnalysisBiologyNatural SciencesEvolutionary BiologyPhylogenetic MethodMarine BiologyMedicineCommon Oysters
Species of Saccostrea are common oysters on Indo-Pacific rocky shores. The taxonomy of this genus is unclear, however, because of morphological plasticity among its constituent species. Oyster samples with distinct morphotypes were collected from shores experiencing different degrees of wave exposure in Japan, Taiwan, China, Vietnam, Singapore and Australia. Intraspecific and interspecific variations in shell characters have been identified. Only S. kegaki could be readily differentiated from S. cucullata -B, S. cucullata -C and S. mordax by multivariate shell allometric analyses. Phylogenetic analyses using partial mitochondrial 16S DNA sequences of approximately 513 base pairs identified two clades that correspond to superspecies, i.e. putative S. cucullata and putative S. mordax , comprising nine and two lineages from the Indo-West Pacific, respectively. These are S. cucullata -A, B, C, D, E, F, G, S. kegaki and S. glomerata in one clade, and S. mordax -A and B in the other. Interspecific sequence divergence (Kimura-2-parameter values) between lineages ranged from 1.02% to 11.74%. Both S. cucullata -C and S. kegaki are restricted to the northern hemisphere, whereas S. glomerata seems to be a temperate species from the southern hemisphere. S. cucullata -D occurs only in Taiwan. Other species, i.e. S. cucullata -A, B, D, E and F and S. mordax -A and B, have a wide range on rocky shores in the tropical and subtropical Western Pacific and in both northern and southern hemispheres.
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PAUP^* : Phylogenetic Analysis Using Parsimony (and other methods) 4.0b8
David L. Swofford · 2001 · 12.8K citations
MEGA2: molecular evolutionary genetics analysis software
Sudhir Kumar, Koichiro Tamura, Ingrid B. Jakobsen et al. · Bioinformatics · 2001 · 6.1K citations · Full text