Numerical Compression Schemes for Proteomics Mass Spectrometry Data

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

Brendan MacLean, Daniela M. Tomazela, Nicholas Shulman et al. · Bioinformatics · 2010 · 4.8K citations · Full text

TANDEM: matching proteins with tandem mass spectra

Robertson Craig, Ronald C. Beavis · Bioinformatics · 2004 · 2.6K citations · Full text

A common open representation of mass spectrometry data and its application to proteomics research

Patrick G. A. Pedrioli, Jimmy K. Eng, Robert Hubley et al. · Nature Biotechnology · 2004 · 788 citations

Mass Spectrometry Data, Proteomic Technology, Proteomics Research +11

mzML—a Community Standard for Mass Spectrometry Data

Lennart Martens, Matthew Chambers, Marc Sturm et al. · Molecular & Cellular Proteomics · 2010 · 774 citations · Full text

Mass Spectrometry Data, Engineering, Data Science +14

A uniform proteomics MS/MS analysis platform utilizing open XML file formats

Andrew Keller, Jimmy K. Eng, Ning Zhang et al. · Molecular Systems Biology · 2005 · 711 citations · Full text

Functional Genomics, Engineering, Medicine +8