Pathview: an R/Bioconductor package for pathway-based data integration and visualization

Supplementary data are available at Bioinformatics online.

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	Year	Citations
KEGG: Kyoto Encyclopedia of Genes and Genomes Hiroyuki Ogata, Susumu Goto, Kazushige Sato, Nucleic Acids Research GeneticsMolecular BiologyGenomicsBioinformatics DatabaseKyoto Encyclopedia	1999	32.2K
Bioconductor: open software development for computational biology and bioinformatics Robert Gentleman, Vincent J. Carey, Douglas M. Bates, Genome biology	2004	12.4K
Reactome: a database of reactions, pathways and biological processes David Croft, Gavin O’Kelly, Guanming Wu, Nucleic Acids Research	2010	1.7K
GAGE: generally applicable gene set enrichment for pathway analysis Weijun Luo, Michael S. Friedman, Kerby Shedden, BMC Bioinformatics	2009	1.4K
MetPA: a web-based metabolomics tool for pathway analysis and visualization Jianguo Xia, David S. Wishart Bioinformatics	2010	754
KEGGgraph: a graph approach to KEGG PATHWAY in R and bioconductor Jitao David Zhang, Stefan Wiemann Bioinformatics	2009	340
Pathway analysis of kidney cancer using proteomics and metabolic profiling Bertrand Perroud, Jinoo Lee, Nelly Valkova, Molecular Cancer	2006	234
Pathway Analysis of Expression Data: Deciphering Functional Building Blocks of Complex Diseases Frank Emmert‐Streib, Galina Glazko PLoS Computational Biology EngineeringMolecular BiologyBioinformatics DatabaseGene Expression ProfilingData Science	2011	118
Finding the Right Questions: Exploratory Pathway Analysis to Enhance Biological Discovery in Large Datasets Thomas Kelder, Bruce R. Conklin, Chris T. Evelo, PLoS Biology	2010	59

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