Concepedia

Phylogenetic Reconstruction of a Known HIV-1 CRF04_cpx Transmission Network Using Maximum Likelihood and Bayesian Methods

Dimitrios Paraskevis, Emmanouil Magiorkinis, Gkikas Magiorkinis, Vassilios G. Kiosses, Philippe Lemey, Anne–Mieke Vandamme, Andrew Rambaut, Angelos Hatzakis

Journal of Molecular Evolution · 2004 · 27 citations · 28 references

DOI

Concepts

References

28

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

Julie Thompson, Desmond G. Higgins, Toby J. Gibson · Nucleic Acids Research · 1994 · 64.9K citations · Full text

, , +14

MODELTEST: testing the model of DNA substitution.

David Posada, Keith A. Crandall · Bioinformatics · 1998 · 20.1K citations

, , +13

PAUP^* : Phylogenetic Analysis Using Parsimony (and other methods) 4.0b8

David L. Swofford · 2001 · 12.8K citations

, , +12

Bayesian Inference of Phylogeny and Its Impact on Evolutionary Biology

John P. Huelsenbeck, Fredrik Ronquist, Rasmus Nielsen et al. · Science · 2001 · 2.8K citations

, , +16

Information theory as an extension of the maximum likelihood principle

H. Akaike · International Symposium on Information Theory · 1973 · 2.4K citations

, , +6