Nature Communications · 2013 · 339 citations · 58 references
Life SciencesPlant BiologyPlant SciencesGene ExpressionGene Regulatory NetworksPlant Molecular BiologyCis-regulatory ElementsPlant Gene ExpressionPlant Transcriptional RegulationPlant TranscriptomicsRegulatory GenomicsSeed TranscriptomicsAnatomy Of Maize KernelPlant Untranslated RegionsRna SequencingRna Sequencing (Rna-seq)Seed Rna SequencingTranscription Factor FamiliesTranscriptional Regulatory Networks
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The Sequence Alignment/Map format and SAMtools
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