LC-IMS-MS Feature Finder: detecting multidimensional liquid chromatography, ion mobility and mass spectrometry features in complex datasets

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

Michael P. Washburn, Dirk Wolters, John R. Yates · Nature Biotechnology · 2001 · 4.8K citations

Proteomic Technology, Functional Genomics, Yeast Proteome +11

Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data

Navdeep Jaitly, Anoop Mayampurath, Kyle Littlefield et al. · BMC Bioinformatics · 2009 · 219 citations · Full text

VIPER: an advanced software package to support high-throughput LC-MS peptide identification

Matthew Monroe, Nikola Tolić, Navdeep Jaitly et al. · Bioinformatics · 2007 · 184 citations · Full text

An LC-IMS-MS Platform Providing Increased Dynamic Range for High-Throughput Proteomic Studies

Erin Baker, Eric A. Livesay, Ronald Moore et al. · Journal of Proteome Research · 2009 · 130 citations · Full text

Biological Mass Spectrometry, Molecular Biology, High-throughput Proteomic Studies +23

OpenMS and TOPP: Open Source Software for LC-MS Data Analysis

Knut Reinert, Oliver Kohlbacher · Methods in molecular biology · 2009 · 71 citations