Computer applications in the biosciences · 2005 · 313 citations · 10 references
Natural SciencesChemical EngineeringChemistryChemical KineticsStochastic ModelingStochastic ProcessesChemical Kinetics ModelingComputational ModelingDiffusion ProcessesKinetic ModelingReaction-diffusion SystemsSimulation MethodsChemical Master EquationMaster Equation ApproachesReaction - Diffusion ModelingReaction-diffusion Stochastic ModelsSimulation Of Diffusion ProcessesStochastic Reaction-diffusion ModelsStochastic SimulationStochastic Simulation Algorithms
UNLABELLED: MesoRD is a tool for stochastic simulation of chemical reactions and diffusion. In particular, it is an implementation of the next subvolume method, which is an exact method to simulate the Markov process corresponding to the reaction-diffusion master equation. AVAILABILITY: MesoRD is free software, written in C++ and licensed under the GNU general public license (GPL). MesoRD runs on Linux, Mac OS X, NetBSD, Solaris and Windows XP. It can be downloaded from http://mesord.sourceforge.net. CONTACT: johan.elf@icm.uu.se; johan.hattne@embl-hamburg.de SUPPLEMENTARY INFORMATION: 'MesoRD User's Guide' and other documents are available at http://mesord.sourceforge.net.
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