BMC Neuroscience · 2012 · 18 citations · 48 references
Life SciencesDevelopmental BiologyMolecular BiologyCell DifferentiationDevelopmental NeuroscienceGene ExpressionEye DevelopmentOcular MorphogenesisPhotoreceptor DifferentiationRetinal DegenerationRetinal DevelopmentRetinal DiseaseGene Regulation In PhotoreceptorsNeural Cell DeathPhotoreceptor Cell DeathPhotoreceptor Cell Fate SpecificationPhotoreceptor Lineage CommitmentPhotoreceptor MorphologyRetinal Degeneration MechanismsRod Photoreceptor Differentiation
BACKGROUND: The rd1 mouse retina is a well-studied model of retinal degeneration where rod photoreceptors undergo cell death beginning at postnatal day (P) 10 until P21. This period coincides with photoreceptor terminal differentiation in a normal retina. We have used the rd1 retina as a model to investigate early molecular defects in developing rod photoreceptors prior to the onset of degeneration. RESULTS: Using a microarray approach, we performed gene profiling comparing rd1 and wild type (wt) retinas at four time points starting at P2, prior to any obvious biochemical or morphological differences, and concluding at P8, prior to the initiation of cell death. Of the 143 identified differentially expressed genes, we focused on Rab acceptor 1 (Rabac1), which codes for the protein Prenylated rab acceptor 1 (PRA1) and plays an important role in vesicular trafficking. Quantitative RT-PCR analysis confirmed reduced expression of PRA1 in rd1 retina at all time points examined. Immunohistochemical observation showed that PRA1-like immunoreactivity (LIR) co-localized with the cis-Golgi marker GM-130 in the photoreceptor as the Golgi translocated from the perikarya to the inner segment during photoreceptor differentiation in wt retinas. Diffuse PRA1-LIR, distinct from the Golgi marker, was seen in the distal inner segment of wt photoreceptors starting at P8. Both plexiform layers contained PRA1 positive punctae independent of GM-130 staining during postnatal development. In the inner retina, PRA1-LIR also colocalized with the Golgi marker in the perinuclear region of most cells. A similar pattern was seen in the rd1 mouse inner retina. However, punctate and significantly reduced PRA1-LIR was present throughout the developing rd1 inner segment, consistent with delayed photoreceptor development and abnormalities in Golgi sorting and vesicular trafficking. CONCLUSIONS: We have identified genes that are differentially regulated in the rd1 retina at early time points, which may give insights into developmental defects that precede photoreceptor cell death. This is the first report of PRA1 expression in the retina. Our data support the hypothesis that PRA1 plays an important role in vesicular trafficking between the Golgi and cilia in differentiating and mature rod photoreceptors.
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Summaries of Affymetrix GeneChip probe level data
Rafael A. Irizarry · Nucleic Acids Research · 2003 · 5K citations · Full text
Quantitative Trait Loci Analysis Using the False Discovery Rate
Yoav Benjamini, Daniel Yekutieli · Genetics · 2005 · 412 citations · Full text