HubAlign: an accurate and efficient method for global alignment of protein–protein interaction networks

Gene Ontology: tool for the unification of biology

Michael Ashburner, Catherine A. Ball, Judith A. Blake et al. · Nature Genetics · 2000 · 43.3K citations · Full text

Functional Genomics, Engineering, Bioinformatics Database +11

An automated method for finding molecular complexes in large protein interaction networks

Gary D. Bader, Christopher W.V. Hogue · BMC Bioinformatics · 2003 · 6.1K citations · Full text

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Evidence for dynamically organized modularity in the yeast protein–protein interaction network

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Protein complexes and functional modules in molecular networks

Victor Spirin, Leonid A. Mirny · Proceedings of the National Academy of Sciences · 2003 · 1.5K citations · Full text

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The IntAct molecular interaction database in 2012

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