A Prototype Tool Set to Support Machine-Assisted Annotation

Abstract

Manually annotating clinical document corpora to generate reference standards for Natural Language Processing (NLP) systems or Machine Learning (ML) is a timeconsuming and labor-intensive endeavor. Although a variety of open source annotation tools currently exist, there is a clear opportunity to develop new tools and assess functionalities that introduce efficiencies into the process of generating reference standards. These features include: management of document corpora and batch assignment, integration of machine-assisted verification functions, semi-automated curation of annotated information, and support of machine-assisted pre-annotation. The goals of reducing annotator workload and improving the quality of reference standards are important considerations for development of new tools. An infrastructure is also needed that will support largescale but secure annotation of sensitive clinical data as well as crowdsourcing which has proven successful for a variety of annotation tasks. We introduce the Extensible Human Oracle Suite of Tools (eHOST)