Experimental Constraints on Quaternary Structure in Alzheimer's β-Amyloid Fibrils

TLDR

Quaternary contacts in Aβ1‑40 fibrils are classified as internal (within a layer) or external (between layers). The study uses solid‑state NMR to constrain the identity and symmetry of contacts between in‑register, parallel β‑sheets in Aβ1‑40 fibrils. Isotopic dilution experiments, combined with restrained molecular‑dynamics simulations and energy minimization, generate full molecular models of gently agitated Aβ1‑40 fibrils and distinguish intra‑ from inter‑molecular contacts. Two‑dimensional 13C‑13C and 15N‑13C NMR spectra reveal specific internal contacts (L17/F19 with I32/L34/V36) and external contacts (I31/G37, M35/G33), while dipolar couplings confirm a D23–K28 salt bridge; distinct internal contacts are also observed in non‑agitated fibrils, indicating morphological differences.

Abstract

We describe solid-state nuclear magnetic resonance (NMR) measurements on fibrils formed by the 40-residue β-amyloid peptide associated with Alzheimer's disease (Aβ1-40) that place constraints on the identity and symmetry of contacts between in-register, parallel β-sheets in the fibrils. We refer to these contacts as internal and external quaternary contacts, depending on whether they are within a single molecular layer or between molecular layers. The data include (1) two-dimensional 13C-13C NMR spectra that indicate internal quaternary contacts between side chains of L17 and F19 and side chains of I32, L34, and V36, as well as external quaternary contacts between side chains of I31 and G37; (2) two-dimensional 15N-13C NMR spectra that indicate external quaternary contacts between the side chain of M35 and the peptide backbone at G33; (3) measurements of magnetic dipole−dipole couplings between the side chain carboxylate group of D23 and the side chain amine group of K28 that indicate salt bridge interactions. Isotopic dilution experiments allow us to make distinctions between intramolecular and intermolecular contacts. On the basis of these data and previously determined structural constraints from solid-state NMR and electron microscopy, we construct full molecular models using restrained molecular dynamics simulations and restrained energy minimization. These models apply to Aβ1-40 fibrils grown with gentle agitation. We also present evidence for different internal quaternary contacts in Aβ1-40 fibrils grown without agitation, which are morphologically distinct.