INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · 2011 · 46 citations · 33 references
Life SciencesMicrobiologyPlant SciencesMicrobial EcologyMicrobial SystematicsSequence Analysis16S Ribosomal Ribonucleic Acid AnalysisGenotypic CharacterizationMicrobial PhylogeneticsPhylogenetic Sequence AnalysisRhizosphere InteractionsRhizosphere Microbiology16S Ribosomal Ribonucleic Acid (Rrna) Sequencing16S Rrna Gene PhylogenyFatty AcidsGenotypic Characterization Of IsolatesMolecular Identification Of StrainsOmega-3 Fatty AcidsPhylogenetic Character AnalysisSequence Similarity
A Gram-negative-staining, non-motile rod, designated GG-w14(T), was isolated from the rhizosphere of Angelica polymorpha Maxim. Phylogenetic analysis of 16S rRNA gene sequences revealed that the isolate belonged to the genus Mucilaginibacter and exhibited 93.9-97.4% 16S rRNA gene sequence similarity with recognized members of the genus Mucilaginibacter (closest relative Mucilaginibacter gossypii Gh-67(T)). DNA-DNA relatedness between strain GG-w14(T) and M. gossypii KCTC 22380(T) was <41%. Strain GG-w14(T) grew at 4-35 °C, at pH 5.0-8.0 and with 0-1% (w/v) NaCl. The isolate hydrolysed casein, CM-cellulose and starch and contained menaquinone 7 as the major menaquinone. The major cellular fatty acids were summed feature 3 (C(16:1)ω7c and/or iso-C(15:0) 2-OH; 39.9%), iso-C(15:0) (24.2%) and iso-C(17:0) 3-OH (12.4%). The DNA G+C content was 42.5 mol%. These data suggest that strain GG-w14(T) should be considered as a representative of a novel species of the genus Mucilaginibacter, for which the name Mucilaginibacter angelicae sp. nov. is proposed. The type strain is GG-w14(T) (=KCTC 23250(T)=NCAIM B 02415(T)).
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CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP
Joseph Felsenstein · Evolution · 1985 · 41.5K citations · Full text
Confidence Limits on Phylogenies: An Approach Using the Bootstrap
Joseph Felsenstein · Evolution · 1985 · 19.3K citations