Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists

BIOEDIT: A USER-FRIENDLY BIOLOGICAL SEQUENCE ALIGNMENT EDITOR AND ANALYSIS PROGRAM FOR WINDOWS 95/98/ NT

T. A. Hall · Nucleic Acids Symposium Series · 1999 · 38.7K citations

Bioinformatics, Engineering, Bioinformatics Database +13

MrBayes 3: Bayesian phylogenetic inference under mixed models

Fredrik Ronquist, John P. Huelsenbeck · Bioinformatics · 2003 · 29.1K citations · Full text

Biology, Phylogenetics, Molecular Ecology +14

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

Kazutaka Katoh · Nucleic Acids Research · 2002 · 17K citations · Full text

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

Alexandros Stamatakis · Bioinformatics · 2006 · 15.7K citations · Full text

Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis

José Castresana · Molecular Biology and Evolution · 2000 · 10.6K citations · Full text

Comparative Genomics, Genetics, Genomics +19