The Journal of Chemical Physics · 2015 · 20 citations · 63 references
Natural SciencesChemistryPhysicsCondensed Matter PhysicsPhysical ChemistryTheoretical ChemistryCoarse-grained ModelingIntermolecular ForcesIntermolecular InteractionsMolecular DynamicsMolecular InteractionsMolecular MechanicsCoarse-grained Molecular DynamicsCoarse-grained PotentialsCoarse-grainingCrystalline Phase FormationCrystalline StructureElectrostatic InteractionsVan Der Waals ForcesVan Der Waals Interactions
In this article, we present and compare two different, coarse-grained approaches to model electrostatic interactions of disc-shaped aromatic molecules, specifically coronene. Our study builds on our previous work [T. Heinemann et al., J. Chem. Phys. 141, 214110 (2014)], where we proposed, based on a systematic coarse-graining procedure starting from the atomistic level, an anisotropic effective (Gay-Berne-like) potential capable of describing van der Waals contributions to the interaction energy. To take into account electrostatics, we introduce, first, a linear quadrupole moment along the symmetry axis of the coronene disc. The second approach takes into account the fact that the partial charges within the molecules are distributed in a ring-like fashion. We then reparametrize the effective Gay-Berne-like potential such that it matches, at short distances, the ring-ring potential. To investigate the validity of these two approaches, we perform many-particle molecular dynamics simulations, focusing on the crystalline phase (karpatite) where electrostatic interaction effects are expected to be particularly relevant for the formation of tilted stacked columns. Specifically, we investigate various structural parameters as well as the melting transition. We find that the second approach yields consistent results with those from experiments despite the fact that the underlying potential decays with the wrong distance dependence at large molecule separations. Our strategy can be transferred to a broader class of molecules, such as benzene or hexabenzocoronene.
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Molecular dynamics with coupling to an external bath
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