PubMed · 2010 · 95 citations · 23 references
Life SciencesGeneticsOphthalmologyGenomicsHuman GeneticsMedical GeneticsCongenital CataractCongenital Eye AnomaliesGenetic DisordersAutosomal Recessive Congenital CataractGenetic Eye DisordersGenome-wide Linkage AnalysisLod Score AnalysisLod Score CalculationMicrosatellite MarkersMissense MutationsMutation
PURPOSE: To investigate the genetic basis of autosomal recessive congenital cataracts in a consanguineous Pakistani family. METHODS: All affected individuals underwent a detailed ophthalmological and clinical examination. Blood samples were collected and genomic DNAs were extracted. A genome-wide scan was performed with polymorphic microsatellite markers. Logarithm of odds (LOD) scores were calculated, and Eph-receptor type-A2 (EPHA2), residing in the critical interval, was sequenced bidirectionally. RESULTS: The clinical and ophthalmological examinations suggested that all affected individuals have nuclear cataracts. Genome-wide linkage analyses localized the critical interval to a 20.78 cM (15.08 Mb) interval on chromosome 1p, with a maximum two-point LOD score of 5.21 at theta=0. Sequencing of EPHA2 residing in the critical interval identified a missense mutation: c.2353G>A, which results in an alanine to threonine substitution (p.A785T). CONCLUSIONS: Here, we report for the first time a missense mutation in EPHA2 associated with autosomal recessive congenital cataracts.
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Easy calculations of lod scores and genetic risks on small computers.
G.M. Lathrop, J.-M. Lalouel · PubMed · 1984 · 1.5K citations
Avoiding Recomputation in Linkage Analysis
Alejandro A. Sch auml ffer, Sandeep Gupta, Kartheek Medhavi Penagamuri Shriram et al. · Human Heredity · 1994 · 673 citations
The EPHA2 gene is associated with cataracts linked to chromosome 1p.
Alan Shiels, Thomas M. Bennett, Harry L S Knopf et al. · PubMed · 2008 · 149 citations · Full text