FEMS Immunology & Medical Microbiology · 2007 · 81 citations · 28 references
Life SciencesMicrobiologyMolecular BiologyAntimicrobial ResistancePhylogeneticsSequence AnalysisAntibiotic ResistanceAntibiotic Resistance GeneticsMicrobial PhylogenyMolecular PhylogenyPhylogenetic Sequence AnalysisResistance Genes16S Rrna Gene PhylogenyMutationPhylogenetic Analysis Of Resistant IsolatesPhylogenetic Character AnalysisPhylogenetics Of ResistanceQuinolone Resistance GenesQuinolone Resistance MechanismsSequence Identity
The nucleotide sequence of the gyrA gene of Arcobacter butzleri, Arcobacter cryaerophilus, Arcobacter cibarius, and Arcobacter skirrowii was determined. The deduced GyrA proteins are closely related to those of Wolinella succinogenes and Helicobacter pullorum, whereas those of Campylobacter species showed less sequence identity. The phylogenetic analysis of GyrA sequences provides a result similar to 16S rRNA gene sequence phylogenetic analysis and allows the discrimination among A. butzleri species. In addition, a Thr-->Ile mutation at amino acid 85 in the quinolone resistance-determining region was associated with ciprofloxacin resistance for two A. butzleri and one A. cryaerophilus ciprofloxacin-resistant strains.
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Primer3 on the WWW for General Users and for Biologist Programmers
Steve Rozen, Helen Skaletsky · Humana Press eBooks · 2003 · 15.1K citations
Multiple sequence alignment with hierarchical clustering
F. Corpet · Nucleic Acids Research · 1988 · 5.4K citations · Full text