Concepedia

G&T-seq: parallel sequencing of single-cell genomes and transcriptomes

Iain C. Macaulay, Wilfried Haerty, Parveen Kumar, Yang Li, Xiaoming Hu, Mabel Teng, Mubeen Goolam, Nathalie Saurat, Paul Coupland, Lesley Shirley,

Nature Methods · 2015 · 821 citations · 43 references

DOI

Concepts

References

43

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love, Wolfgang Huber, Simon Anders · Genome biology · 2014 · 100.5K citations · Full text

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Fast and accurate short read alignment with Burrows–Wheeler transform

Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text

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Cutadapt removes adapter sequences from high-throughput sequencing reads

Marcel Martin · EMBnet journal · 2011 · 35.8K citations · Full text

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BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan, Ira M. Hall · Bioinformatics · 2010 · 30.4K citations · Full text

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TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Daehwan Kim, Geo Pertea, Cole Trapnell et al. · Genome biology · 2013 · 13.7K citations · Full text

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