ChemPhysChem · 2014 · 23 citations · 45 references
Natural SciencesChemistryPhysicsComputational ChemistryMolecular RecognitionStructural BiologyIntermolecular InteractionsLigand BindingMolecular DynamicsMolecular InteractionsMolecular MachinesReceptor-ligand InteractionsExplicit Solvent ModelsLigand FlexibilityMacromolecular Complex FormationMolecular Dynamics Of ComplexesMolecular Rotor BehaviorReceptor FlexibilityReceptor-ligand Complex Modeling
We report the synthesis of a tribenzotriquinacene-based (TBTQ) receptor (3) for C60 fullerene, which is extended by pentiptycene moieties to provide an almost enclosed concave ball bearing. The system serves as a model for a self-assembling molecular rotor with a flexible and adapting stator. Unexpectedly, nuclear magnetic resonance spectroscopic investigations reveal a surprisingly low complex stability constant of K1 =213±37 M(-1) for [C60 ⊂3], seemingly inconsistent with the previously reported TBTQ systems. Molecular dynamics (MD) simulations have been conducted for three different [C60 ⊂TBTQ] complexes to resolve this. Because of the dominating dispersive interactions, the binding energies increase with the contact area between guest and host, however, only for rigid host structures. By means of free-energy calculations with an explicit solvent model it can be shown that the novel flexible TBTQ receptor 3 binds weakly because of hampering entropic contributions.
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Density-functional thermochemistry. III. The role of exact exchange
Axel D. Becke · The Journal of Chemical Physics · 1993 · 102.8K citations
Natural Sciences, Chemistry, Physics +13