LysargiNase mirrors trypsin for protein C-terminal and methylation-site identification

UCSF Chimera—A visualization system for exploratory research and analysis

Eric F. Pettersen, Thomas D. Goddard, Conrad C. Huang et al. · Journal of Computational Chemistry · 2004 · 47.8K citations

Computing, Bioinformatics, Visualization +17

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

Jürgen Cox, Matthias Mann · Nature Biotechnology · 2008 · 15.7K citations

Life Sciences, Biochemistry, Mass Spectrometric Analysis +15

Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment

Jürgen Cox, Nadin Neuhauser, Annette Michalski et al. · Journal of Proteome Research · 2011 · 5.9K citations · Full text

Life Sciences, Biochemistry, Bioinformatics +17

Empirical Statistical Model To Estimate the Accuracy of Peptide Identifications Made by MS/MS and Database Search

Andrew Keller, Alexey I. Nesvizhskii, Eugene Kolker et al. · Analytical Chemistry · 2002 · 5K citations

Life Sciences, Bioinformatics, Computer Science +17

Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips

Juri Rappsilber, Matthias Mann, Yasushi Ishihama · Nature Protocols · 2007 · 4.9K citations

Life Sciences, Biochemistry, Biotechnology +10