AIDS Research and Human Retroviruses · 2008 · 23 citations · 17 references
Life SciencesGeneticsMolecular BiologyMolecular VirologyPhylogeneticsVirologyEvolutionary RelationshipsPhylogenetic EpidemiologyPhylogenetic GeneticsPhylogenomic AnalysisSequence-based EpidemiologyAncestral MigrationHuman Migration HistoryInterregional Slave TradePhylogenetic Character AnalysisPhylogenetic Diversity AnalysisRegional Lineage DistributionVariant Emergence StudiesVirus Evolutionary Relationships
We performed an HTLV epidemiological study of 986 individuals from 17 villages from the same state of Salvador, the city with the highest HTLV-1 prevalence in Brazil. The HTLV-1 prevalence was 3.85%, 1.56%, and 1.23% in three villages. Phylogenetic analysis of the LTR region demonstrated that all positive samples analyzed belonged to the Transcontinental subgroup of the HTLV-1 Cosmopolitan subtype. Three of the new HTLV-1 sequences formed a well-supported clade within one of the Latin American clusters that contain a South African sequence. This Latin American cluster that segregated from the same ancestor as the other clade contained a Central African sequence. This ancestral relationship could support our previous report that suggests that this subgroup was first introduced into South Africa as a result of the migration of the Bantu population from Central Africa to Southern Africa over the past 3000 years, and afterward to Brazil during the slave trade between the sixteenth and nineteenth centuries.
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MODELTEST: testing the model of DNA substitution.
David Posada, Keith A. Crandall · Bioinformatics · 1998 · 20.1K citations
Bernadette Catalan-Soares, Anna Bárbara de Freitas Carneiro-Proietti, Fernando Augusto Proietti · Cadernos de Saúde Pública · 2005 · 193 citations · Full text