Publication | Open Access
Dynamical structure function identifiability conditions enabling signal structure reconstruction
39
Citations
10
References
2012
Year
Unknown Venue
EngineeringMolecular BiologySignal Structure ReconstructionStructural IdentificationTarget SpecificityBiological NetworkSignal ReconstructionSystems EngineeringComplex Biological SystemDynamic AnalysisInverse ProblemsMechanism AnalysisControlled Dynamical SystemsSignal ProcessingInterconnection PatternsComputational NeuroscienceComputational BiologyRegulatory Network ModellingSystems BiologyBiological Computation
Networks of controlled dynamical systems exhibit a variety of interconnection patterns that could be interpreted as the structure of the system. One such interpretation of system structure is a system's signal structure, characterized as the open-loop causal dependencies among manifest variables and represented by its dynamical structure function. Although this notion of structure is among the weakest available, previous work has shown that if no a priori structural information is known about the system, not even the Boolean structure of the dynamical structure function is identifiable. Consequently, one method previously suggested for obtaining the necessary a priori structural information is to leverage knowledge about target specificity of the controlled inputs. This work extends these results to demonstrate precisely the a priori structural information that is both necessary and sufficient to reconstruct the network from input-output data. This extension is important because it significantly broadens the applicability of the identifiability conditions, enabling the design of network reconstruction experiments that were previously impossible due to practical constraints on the types of actuation mechanisms available to the engineer or scientist. The work is motivated by the proteomics problem of reconstructing the Per-Arnt-Sim Kinase pathway used in the metabolism of sugars.
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