The Journal of Physical Chemistry B · 2001 · 33 citations · 50 references
Life SciencesBiochemistryChemistryProtein BiochemistryStructural BiochemistryStructural BiologyAmino Acid ChemistryPeptide Bond ChemistryPeptide ChemistryProtein StructureSecondary StructureAcetaldehyde ChemistryAcetaldehyde QuantificationConcerted Proton TransferFlexibilityGlycine Effects On FlexibilityPeptide Bond Conformational ConstraintsProton Transfer MechanismsRadical Reaction Mechanisms
For Thr−(X) n −Met peptides, we have correlated the efficiency of proton transfer and an intramolecular radical reaction between a methionyl hydroxy sulfuranyl radical and the N-terminus with the flexibility of the spacer sequence −(X) n −, X = Gly and Pro and n = 0−4. Hydroxy sulfuranyl radicals accept a proton from the N-terminus to yield a cyclic (S∴Ν) + three-electron-bonded intermediate which ultimately expels acetaldehyde. Acetaldehyde formation was used to quantify the efficiency of proton transfer and cyclization, whereas peptide flexibility was calculated by molecular modeling methods. For X = Gly, proton transfer and cyclization proceeds in a concerted manner, and peptide flexibility mainly controls the proton transfer step. For X = Pro, no low-energy conformation was located, which allows concerted proton transfer and cyclization, indicating that proton transfer occurs over longer distances, likely via bridging water molecules. These sequence-dependent differences are reflected in different β-values for the proton-transfer step, β = 0.66 ± 0.02 Å -1 for X = Gly and β ≈ 0.12 ± 0.1 Å -1 for X = Pro.
50
van der Waals Volumes and Radii
A. Bondì · The Journal of Physical Chemistry · 1964 · 19.2K citations
George V. Buxton, C.L. Greenstock, W. Phillips Helman et al. · Journal of Physical and Chemical Reference Data · 1988 · 12.1K citations