The Journal of Organic Chemistry · 1998 · 62 citations · 21 references
Natural SciencesChemistryCrystal StructurePhysical ChemistryTheoretical ChemistryConformational AnalysisCrystal ChemistryCrystallographyMolecular SymmetryX-ray CrystallographyX-ray DiffractionAqueous SolvationConformational Analysis Of PyranosesConformational OptimizationCrystalline StructureElectrostatic InteractionsMolecular Conformation AnalysisMolecular Conformation In SolutionX-ray Diffraction Analysis
Abstract: Conformations of flexible zwitterionic ω-pyridinium alkanoates (PBn) with n methylene units in the tether and their hydrates and hydrochlorides are studied in the solid state by X-ray diffraction, in aqueous solution by FT-IR and 1 H, 13 C, and 14 N NMR spectroscopies, and in the gas phase by PM3, SAM1, and DFT calculations. PB1 and PB1·H 2 O in crystals have a conformation with the N + ···O intramolecular distance of ca. 2.7 Å, while PB3·2H 2 O and PB10·3H 2 O have a trans -zigzag conformation and are arranged antiparallel. Structures of isolated molecules of ω-pyridinium alkanoates (PBn) and their dihydrates (PBn·2H 2 O) and hydrochlorides (PBn·HCl) optimized using the PM3, SAM1, and DFT methods are significantly different from those observed in the crystals. In crystals, when n ≥ 2, as a result of electrostatic interactions in the crystal lattice, the positively charged center (N + atom) interacts with negative carboxyl groups, water molecules, or chloride ions of the neighboring molecules (intermolecular charge compensation), while in the gas phase only with their own (intramolecular charge compensation). In aqueous solutions, similarly as in the crystalline state, distances between the charged centers increase monotonically with increasing number of methylene units in the tether. The 1 H and 13 C NMR data suggest that polymethylene chains in PBn contain more folded (gauche) conformations than do sodium salts of carboxylic acids without a charged N + atom. The SCRF calculations predict slightly longer N + ···C c distances than those derived by Chevalier and Perchec for trimethylammonium carboxylates from 13 C NMR spectra. This suggests that the SCRF model underestimates contribution of the gauche conformers in aqueous solutions.
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