Journal of Bacteriology · 2012 · 19 citations · 6 references
Life SciencesMicrobiologyPlant SciencesComparative GenomicsGenomicsPlant GenomicsGrapevine Genome SequencingMetagenome AssemblyGrape GenomicsGrapevine Genome AnnotationGrapevine Genome AssemblyWhole-genome Sequence Analysis
Methylobacterium sp. strain GXF4 is an isolate from grapevine. Here we present the sequence, assembly, and annotation of its genome, which may shed light on its role as a grapevine xylem inhabitant. To our knowledge, this is the first genome announcement of a plant xylem-associated strain of the genus Methylobacterium.
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Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt, Gwo-Liang Chen, Philip LoCascio et al. · BMC Bioinformatics · 2010 · 13.1K citations · Full text
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
Karin Lagesen, Peter F. Hallin, Einar Andreas Rødland et al. · Nucleic Acids Research · 2007 · 6.3K citations · Full text