Nucleic Acids Research · 2014 · 694 citations · 20 references
Functional GenomicsEngineeringBiological DatabaseGene Sequence AnnotationBioinformatics DatabaseGeneticsComputational GenomicsComputational BiologyAdditional ContentGene-centered Information ResourceBiological DatabasesGene DatabaseGenomicsGene OntologySystems BiologyMedicineBioinformatics
NCBI’s Gene database aggregates gene‑specific data from multiple sources. Gene records are constructed from RefSeq genomes and enriched with curated and automated data from model organism databases, Gene Ontology, and other NCBI resources, and are uniquely identified and accessible through Entrez browsing, E‑Utilities, and FTP.
The National Center for Biotechnology Information's (NCBI) Gene database (www.ncbi.nlm.nih.gov/gene) integrates gene-specific information from multiple data sources. NCBI Reference Sequence (RefSeq) genomes for viruses, prokaryotes and eukaryotes are the primary foundation for Gene records in that they form the critical association between sequence and a tracked gene upon which additional functional and descriptive content is anchored. Additional content is integrated based on the genomic location and RefSeq transcript and protein sequence data. The content of a Gene record represents the integration of curation and automated processing from RefSeq, collaborating model organism databases, consortia such as Gene Ontology, and other databases within NCBI. Records in Gene are assigned unique, tracked integers as identifiers. The content (citations, nomenclature, genomic location, gene products and their attributes, phenotypes, sequences, interactions, variation details, maps, expression, homologs, protein domains and external databases) is available via interactive browsing through NCBI's Entrez system, via NCBI's Entrez programming utilities (E-Utilities and Entrez Direct) and for bulk transfer by FTP.
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