JAMA · 2009 · 120 citations · 17 references
Life SciencesGeneticsMolecular GeneticsDementiaHuman GeneticsMedical GeneticsDementia GeneticsDementia Risk FactorsGenome-wide Association StudiesGenotype-phenotype Association AnalysisGenotype-phenotype CorrelationApoe GeneticsAssociation StudiesCommon Genetic VariantsGenotype-phenotype AssociationsLinkage Disequilibrium AnalysisSingle Nucleotide Polymorphism Association StudiesSingle-nucleotide Polymorphism Association AnalysisSingle-nucleotide Polymorphisms
This is the first in a series of 3 articles serving as an introduction to clinicians wishing to read and critically appraise genetic association studies. We summarize the key concepts in genetics that clinicians must understand to review these studies, including the structure of DNA, transcription and translation, patterns of inheritance, Hardy-Weinberg equilibrium, and linkage disequilibrium. We review the types of DNA variation, including single-nucleotide polymorphisms (SNPs), insertions, and deletions, and how these can affect protein function. We introduce the idea of genetic association for both single-candidate gene and genome-wide association studies, in which thousands of genetic variants are tested for association with disease. We use the APOE polymorphism and its association with dementia as a case study to demonstrate the concepts and introduce the terminology used in this field. The second and third articles will focus on issues of validity and applicability.
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Initial sequencing and analysis of the human genome
Eric S. Lander, Lauren Linton, Bruce W. Birren et al. · Nature · 2001 · 24.6K citations · Full text
A haplotype map of the human genome
A second generation human haplotype map of over 3.1 million SNPs
Sarah S. Murray, Todd A. Johnson · Nature · 2007 · 4.6K citations · Full text