Icy: an open bioimage informatics platform for extended reproducible research

Fiji: an open-source platform for biological-image analysis

Johannes Schindelin, Ignacio Arganda‐Carreras, Erwin Frise et al. · Nature Methods · 2012 · 70.9K citations

Engineering, Bioinformatics, Biology +9

Image processing with ImageJ

Michael D. Abràmoff, Paulo Magalhães, Sunanda J. Ram · Data Archiving and Networked Services (DANS) · 2004 · 11.9K citations · Full text

Arts, Computer Science, Biomedical Imaging +16

CellProfiler: image analysis software for identifying and quantifying cell phenotypes

Anne E. Carpenter, Thouis R. Jones, Michael R. Lamprecht et al. · Genome biology · 2006 · 5.5K citations · Full text

Life Sciences, Cell Biology, Molecular Biology +14

Design and validation of a tool for neurite tracing and analysis in fluorescence microscopy images

Erik Meijering, Mathews Jacob, J.‐C. Floyd Sarria et al. · Cytometry Part A · 2004 · 1.7K citations · Full text

Medicine, Neurobiology, Neuroscience +16

OMERO: flexible, model-driven data management for experimental biology

Chris Allan, Jean‐Marie Burel, Josh Moore et al. · Nature Methods · 2012 · 703 citations

Life Sciences, Bioinformatics, Biology +7