The Journal of Chemical Physics · 2013 · 51 citations · 48 references
Natural SciencesChemistryPhysicsComputational ChemistryCondensed Matter PhysicsPhysical ChemistryCrystallographyIntermolecular ForcesMolecular DynamicsMolecular StructurePhase EquilibriaPhase TransitionsCluster Size Distribution AnalysisCluster Temperature ProfilesNeutron Diffraction Phase AnalysisPowder Neutron DiffractionStructural Characterization Of ClustersTemperature DependenceTemperature-dependent Structure Analysis
The structure of liquid 1-propanol is investigated as a function of temperature using neutron diffraction together with Empirical Potential Structure Refinement modelling. The combined diffraction and computer modelling analysis demonstrates that propanol molecules form hydrogen bonded clusters with a relatively wide size distribution, which broadens at lower temperatures. We find that the cluster size distribution is well described by a recently proposed statistical model for branched H-bonded networks [P. Sillrén, J. Bielecki, J. Mattsson, L. Börjesson, and A. Matic, J. Chem. Phys. 136, 094514 (2012)]. The average cluster size increases from ~3 to 7 molecules, whilst the standard deviation of the size distribution increases from 3.3 to 8.5 as the temperature is decreased from 293 to 155 K. The clusters are slightly branched, with a higher degree of branching towards lower temperatures. An analysis of the cluster gyration tensor (R(mn)) reveals an average elongated ellipsoidal shape with axes having proportions 1:1.4:1.9. We find that the average radius of gyration has a cluster size dependence consistent with that of fractal clusters, R(g) ∝ n(1/D), with a fractal dimension D ≈ 2.20, which is close to D = 2.00 expected for an ideal random walk or D = 2.11 expected for reaction limited aggregation. The characteristic angles between the H-bonded OH-groups that constitute the clusters show only a weak temperature dependence with O-H···O angles becoming more narrowly distributed around 180° at lower temperatures.
48
Definition of the hydrogen bond (IUPAC Recommendations 2011)
E. Arunan, Gautam R. Desiraju, Roger A. Klein et al. · Pure and Applied Chemistry · 2011 · 1.9K citations
OPLS all-atom force field for carbohydrates
Wolfgang Damm, Antonio Frontera, Julian Tirado‐Rives et al. · Journal of Computational Chemistry · 1997 · 668 citations · Full text