Slippery when wet: Phylogeny and character evolution in the gelatinous cyanobacterial lichens (Peltigerales, Ascomycetes)

MrBayes 3: Bayesian phylogenetic inference under mixed models

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Life Sciences, Bioinformatics, Evolutionary Biology +17

Clustal W and Clustal X version 2.0

Mark Larkin, Gordon Blackshields, Nigel P. Brown et al. · Bioinformatics · 2007 · 29.1K citations · Full text

Life Sciences, Bioinformatics, Computer Science +7

MODELTEST: testing the model of DNA substitution.

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MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

Kazutaka Katoh · Nucleic Acids Research · 2002 · 17.8K citations · Full text

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RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

Alexandros Stamatakis · Bioinformatics · 2006 · 15.9K citations · Full text

Life Sciences, Bioinformatics, High-performance Computing +17