EXACT ALGORITHMS FOR PLANTED MOTIF CHALLENGE PROBLEMS

Detecting Subtle Sequence Signals: a Gibbs Sampling Strategy for Multiple Alignment

Charles E. Lawrence, Stephen F. Altschul, Mark S. Boguski et al. · Science · 1993 · 1.8K citations

Life Sciences, Bioinformatics, Molecular Biology +17

Identifying DNA and protein patterns with statistically significant alignments of multiple sequences.

Gerald Z. Hertz, Gary D. Stormo · Bioinformatics · 1999 · 1.3K citations · Full text

Life Sciences, Bioinformatics, Biology +13

Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies 1 1Edited by G. von Heijne

Jacques van Helden, Bruno André, Julio Collado‐Vides · Journal of Molecular Biology · 1998 · 750 citations

Life Sciences, Genetics, Molecular Biology +15

Unsupervised learning of multiple motifs in biopolymers using expectation maximization

Timothy L. Bailey, Charles Elkan · Machine Learning · 1995 · 670 citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +14

Combinatorial approaches to finding subtle signals in DNA sequences.

Pavel A. Pevzner, Sing‐Hoi Sze · PubMed · 2000 · 550 citations

Life Sciences, Bioinformatics, Molecular Biology +17