Concepedia

Comparative genomics of enterohemorrhagic Escherichia coli O145:H28 demonstrates a common evolutionary lineage with Escherichia coli O157:H7

Kerry K. Cooper, Robert E. Mandrell, Jacqueline W. Louie, Jonas Korlach, Tyson A. Clark, Craig T. Parker, Steven Huynh, Patrick Chain, Sanaa Ahmed, Michelle Qiu Carter

BMC Genomics · 2014 · 89 citations · 66 references

Open access

References

66

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

Matthew D. Kearse, Richard Moir, Amy Wilson et al. · Bioinformatics · 2012 · 20.1K citations · Full text

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

Kazutaka Katoh · Nucleic Acids Research · 2002 · 17K citations · Full text

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

Stéphane Guindon, Olivier Gascuel · Systematic Biology · 2003 · 16.8K citations · Full text

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

Alexandros Stamatakis · Bioinformatics · 2006 · 15.7K citations · Full text

The RAST Server: Rapid Annotations using Subsystems Technology

Ramy K. Aziz, Daniela Bartels, Aaron A. Best et al. · BMC Genomics · 2008 · 11.5K citations · Full text