Conflicting molecular phylogenies of European long-eared bats (Plecotus) can be explained by cryptic diversity

The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Naruya Saitou, M Nei · Molecular Biology and Evolution · 1987 · 60.2K citations · Full text

Botany, Genetics, Phylogenetic Analysis +19

CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP

Joseph Felsenstein · Evolution · 1985 · 41K citations · Full text

Biology, Biodiversity, Phylogenetics +13

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

Julie Thompson · Nucleic Acids Research · 1997 · 39.1K citations · Full text

Engineering, Genetics, Molecular Biology +21

MRBAYES: Bayesian inference of phylogenetic trees

John P. Huelsenbeck, Fredrik Ronquist · Bioinformatics · 2001 · 21.9K citations · Full text

MODELTEST: testing the model of DNA substitution.

David Posada, Keith A. Crandall · Bioinformatics · 1998 · 20K citations