Science · 2012 · 676 citations · 55 references
Life SciencesBiochemistryComputational DesignComputational ChemistryProtein EngineeringStructural BiologyProtein StructureProtein-based NanomaterialsProtein-ligand DockingSelf-assembled NanostructuresSelf-assemblySelf-assembly Of NanomaterialsDna-based Self-assemblyProtein NanostructuresProtein-based MaterialsSelf-assembling MaterialsSelf-assembling Protein MaterialsSelf-assembly Of Protein ComplexesStructural Modeling Of Protein ComplexesTetrahedral Complexes
Self‑assembling biomolecules are promising building blocks for functional materials, yet protein‑based designs lag behind the more advanced DNA‑based counterparts. The authors present a computational pipeline that symmetrically docks protein building blocks onto a target architecture and then designs binding interfaces to drive self‑assembly. Using trimeric building blocks, the method produced 12‑subunit tetrahedral and 24‑subunit octahedral complexes, and a 12‑subunit tetrahedral cage was also assembled from fused oligomeric domains. The study references King et al.
Design and Build Self-assembling biomolecules are attractive building blocks in the development of functional materials. Sophisticated DNA-based materials have been developed; however, progress in designing protein-based materials has been slower. King et al. (p. 1171 ) describe a general computational method in which protein building blocks are first symmetrically docked onto a target architecture, and then binding interfaces that drive self-assembly of the building blocks are designed. As a proof of principle, trimeric building blocks were used to design self-assembling 12-subunit complexes with tetrahedral symmetry and 24-subunit complexes with octahedral symmetry. Lai et al. (p. 1129 ) were able to build a 12-subunit tetrahedral protein cage from fused oligomeric protein domains.
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Features and development of <i>Coot</i>
Paul Emsley, Bernhard Lohkamp, W. G. Scott et al. · Acta Crystallographica Section D Biological Crystallography · 2010 · 29.6K citations · Full text
<i>Phaser</i>crystallographic software
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