SIAM Journal on Computing · 1999 · 194 citations · 31 references
ComputingComputer ScienceMolecular BiologyAlgorithmsCombinatoricsTheory Of ComputationCombinatorial OptimizationComputational ComplexityDirected Acyclic GraphsGraph AlgorithmsGraph TheoryParameterized AlgorithmsComputational Complexity Of Graph AlgorithmsFixed-parameter TractabilityGraph CompletionNp-complete ProblemsParameterized ComplexityParameterized Complexity ClassesParameterized Graph AlgorithmsTree Search Algorithms
We study the parameterized complexity of three NP-hard graph completion problems. The minimum fill-in problem asks if a graph can be triangulated by adding at most k edges. We develop O(ck m) and O(k2mn+f(k)) algorithms for this problem on a graph with n vertices and m edges. Here f(k) is exponential in k and the constants hidden by the big-O notation are small and do not depend on k. In particular, this implies that the problem is fixed-parameter tractable (FPT). The proper interval graph completion problem, motivated by molecular biology, asks if a graph can be made proper interval by adding no more than k edges. We show that the problem is FPT by providing a simple search-tree-based algorithm that solves it in O(ck m)-time. Similarly, we show that the parameterized version of the strongly chordal graph completion problem is FPT by giving an O(ck m log n)-time algorithm for it. All of our algorithms can actually enumerate all possible k-completions within the same time bounds.
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Concrete Mathematics: A Foundation for Computer Science
Ronald Graham, Donald E. Knuth, Oren Patashnik et al. · Computers in Physics · 1989 · 2.5K citations
Concrete Mathematics: A Foundation for Computer Science.
Edward A. Bender, Ronald Graham, Donald E. Knuth et al. · American Mathematical Monthly · 1991 · 1.4K citations