Publication | Closed Access
An Analysis of Porphyrin Molecular FlexibilityUse of Porphyrin Diacids
164
Citations
54
References
1997
Year
Porphyrin Molecular FlexibilityuseBioorganic ChemistryPorphyrin DiacidsEffective D2d SymmetryEngineeringNatural SciencesCyclodextrin ProductionChemical BondConformational StudyChemistryPorphyrin Diacid SpeciesSupramolecular ChemistryMolecular ChemistryCrystallographyBiophysicsHost-guest Chemistry
The crystal structures of three porphyrin diacid species, [H4OEP](ClO4)2, [H4TPP](ClO4)2, and [H4TMP](ClO4)2, have been determined from low-temperature X-ray diffraction data to delineate how the peripheral substituents of the porphyrin affect the overall molecular flexibility. [H4OEP](ClO4)2 (|Cb| = 0.46 Å), [H4TMP](ClO4)2 (|Cb| = 0.67 Å, molecule 1), and [H4TPP](ClO4)2 (|Cb| = 0.93 Å) show increasingly saddled core conformations with effective D2d symmetry. The mean porphyrin−aryl group dihedral angles in [H4TPP](ClO4)2 and [H4TMP](ClO4)2 (molecule 1) are 27(2)° and 63(13)°, respectively. The steric bulk of the mesityl substituents in [H4TMP]2+ limits the range of observed porphyrin−aryl group dihedral angles to >50° and, consequently, the magnitude of the core distortion. [H4TMP]2+ is therefore less flexible than [H4TPP]2+. Molecular mechanics calculations, using a modified version of MM2(87) and a newly developed force field for porphyrin diacids, correctly predict that the flexibility of meso-tetraaryl porphyrin diacids decreases as the steric bulk of the peripheral substituents increases: [H4TPyP]2+ ≈ [H4TPP]2+ > [H4T-2,6-(OH)2 PP]2+ ≈ [H4T-2,6-F2 PP]2+ > [H4T-2,6-Cl2 PP]2+ ≈ [H4TMP]2+. Grid searches of conformational space for [H4porphine]2+, [H4OEP]2+, [H4TPP]2+, and [H4T-2,6-Cl2 PP]2+ located pairs of inversion-related minima with D2d -saddled and C2h-stepped core conformations. The in vacuo strain energy barrier to inversion of the lowest-energy D2d-saddled conformation increases from 0.45 kcal/mol in [H4porphine]2+ to 1.9 kcal/mol in [H4T-2,6-Cl2PP]2+. The calculations indicate that the relative stability and magnitude of distortion of the D2d isomer increases as the steric bulk of the peripheral substituents increases; [H4OEP]2+ is therefore calculated to be less distorted than [H4TPP]2+, in agreement with the X-ray structures of these species.
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