International Journal of Bioinformatics Research and Applications · 2007 · 87 citations · 21 references
ComputingBioinformaticsComputational BiologyGrid ComputingKnowledge RepresentationAnnotationFormal OntologyOntology EngineeringResource DiscoveryService DiscoveryWorkflow OrchestrationAnnotation ToolsDiscovery ServicesGrid OntologyGrid Service CompositionGrid ServicesOntology-based DiscoveryProgrammatic AccessSemantic Middleware
(my)Grid supports in silico experiments in the life sciences, enabling the design and enactment of workflows as well as providing components to assist service discovery, data and metadata management. The (my)Grid ontology is one component in a larger semantic discovery framework for the identification of the highly distributed and heterogeneous bioinformatics services in the public domain. From an initial model of formal OWL-DL semantics throughout, we now adopt a spectrum of expressivity and reasoning for different tasks in service annotation and discovery. Here, we discuss the development and use of the (my)Grid ontology and our experiences in semantic service discovery.
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The Gene Ontology (GO) database and informatics resource
Nucleic Acids Research · 2003 · 4.7K citations · Full text
The Universal Protein Resource (UniProt)
Amos Bairoch · Nucleic Acids Research · 2004 · 3.8K citations · Full text
Taverna: a tool for the composition and enactment of bioinformatics workflows
Tom Oinn, Matthew Addis, Justin Ferris et al. · Bioinformatics · 2004 · 1.6K citations · Full text