Mycologia · 2003 · 42 citations · 33 references
Traditional ClassificationGeneticsTaxonomyG. CfMolecular GeneticsGenomicsDna BarcodingPhylogenetic AnalysisPhylogeneticsMolecular EcologyTraditional SubgroupsBiochemical TaxonomyGenetic VariationPhylogenomicsBiologyNatural SciencesEvolutionary BiologyTraditional Infrageneric ClassificationPhylogenetic MethodCladisticsSymbiosisTaxonomy (Biology)Medicine
The traditional classification of Gymnopilus (Agaricales) recognizes two primary groups, Annulati and Gymnopilus, based on the presence or absence of a membranous partial veil. While our analyses of DNA sequence data from the nuclear ribosomal ITS1-5.8S-ITS2 (ITS) gene supports the monophyly of the genus, these traditional subgroups were not recovered. Five well-supported clades within the genus were identified through these analyses: 1) the spectabilis-imperialis group; 2) nevadensis-penetrans group; 3) a clade formed by G. underwoodii, G. validipes and G. cf. flavidellus; 4) aeruginosus-luteofolius group; and 5) lepidotus-subearlei group. Relationships among these subgroups were not resolved.
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CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP
Joseph Felsenstein · Evolution · 1985 · 41K citations · Full text
Biology, Biodiversity, Phylogenetics +13
MRBAYES: Bayesian inference of phylogenetic trees
John P. Huelsenbeck, Fredrik Ronquist · Bioinformatics · 2001 · 21.9K citations · Full text
MODELTEST: testing the model of DNA substitution.
David Posada, Keith A. Crandall · Bioinformatics · 1998 · 20K citations