CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

Julie Thompson, Desmond G. Higgins, Toby J. Gibson

Nucleic Acids Research

The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Naruya Saitou, M Nei

Molecular Biology and Evolution

BotanyGeneticsPhylogenetic AnalysisPhylogeneticsMolecular Ecology +17

A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

Journal of Molecular Evolution

BiologyPhylogeneticsMolecular EcologyComparative GenomicsGenetics +13

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

Koichiro Tamura, Joel T. Dudley, M Nei, +1

Molecular Biology and Evolution

Multilocus sequence typing: A portable approach to the identification of clones within populations of pathogenic microorganisms

Martin Maiden, Jane A. Bygraves, Edward J. Feil, +10

Proceedings of the National Academy of Sciences

Pathogenic MicrobiologyPathogen DetectionGeneticsPathologyGenomics +17

Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology.

Erko Stackebrandt, Wilhelm Frederiksen, George M Garrity, +10

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

BiologyAd Hoc CommitteeFebruary 2002Microbial SystematicsBacteriology +9

Notes on the characterization of prokaryote strains for taxonomic purposes

Brian J. Tindall, Ramon Rosselló‐Móra, H.-J. Busse, +2

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

TaxonomyDynamic FieldsProkaryote StrainsMicrobial EvolutionPhylogenetic Analysis +14

Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology

Erko Stackebrandt

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Phylogeny of the genus Pseudomonas: intrageneric structure reconstructed from the nucleotide sequences of gyrB and rpoD genes The GenBank accession numbers for the sequences determined in this work are: gyrB, D37926, D37297, D86005–D86019 and AB039381–AB039492; rpoD, D86020–D86036 and AB039493–AB039624.

Satoshi Yamamoto, Hiroaki Kasai, Dawn L. Arnold, +3

Microbiology

Phylogenetic Interrelationships of Members of the Genera Aeromonas and Plesiomonas as Determined by 16S Ribosomal DNA Sequencing: Lack of Congruence with Results of DNA-DNA Hybridizations

Antonio Martínez‐Murcia, Salvador Benlloch, Matthew Collins

International Journal of Systematic Bacteriology

Comparative GenomicsGeneticsMicrobial EvolutionRibosomal Dna SequencingPhylogenetic Analysis +15