Concepedia

FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties11Edited by B. Honig

Jiye Shi, Tom L. Blundell, Kenji Mizuguchi

Journal of Molecular Biology · 2001 · 1.2K citations · 63 references

Concepts

BiologySequence MotifPhylogeneticsB. HonigNatural SciencesGeneticsSequence AnalysisComputational BiologyGene RecognitionStructure-dependent GapGenomicsSequence AlignmentSequence-structure Homology RecognitionMedicineBioinformaticsProtein Bioinformatics

References

63

Basic local alignment search tool

Stephen F. Altschul, Warren Gish, Webb Miller et al. · Journal of Molecular Biology · 1990 · 92.8K citations

Bioinformatics, Engineering, Information Retrieval +10

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

Julie Thompson, Desmond G. Higgins, Toby J. Gibson · Nucleic Acids Research · 1994 · 64.4K citations · Full text

The Protein Data Bank

Helen M. Berman · Nucleic Acids Research · 2000 · 38.9K citations

Biological Database, Biochemistry, Structural Bioinformatics +12

Comparative Protein Modelling by Satisfaction of Spatial Restraints

Andrej Săli, Tom L. Blundell · Journal of Molecular Biology · 1993 · 13K citations

Engineering, Comparative Protein Modelling, Protein Folding +8

A general method applicable to the search for similarities in the amino acid sequence of two proteins

Saul B. Needleman, Christian D. Wunsch · Journal of Molecular Biology · 1970 · 11.4K citations

Amino Acid Sequence, Biochemistry, Structural Bioinformatics +14