Human Promoters Are Intrinsically Directional

Fast gapped-read alignment with Bowtie 2

Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 58.3K citations · Full text

Long-read Sequencing, Sequence Assembly, Natural Sciences +7

Cutadapt removes adapter sequences from high-throughput sequencing reads

Marcel Martin · EMBnet journal · 2011 · 34K citations · Full text

Genetics, Genomics, High Throughput Sequencing +17

BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan, Ira M. Hall · Bioinformatics · 2010 · 28.9K citations · Full text

An integrated encyclopedia of DNA elements in the human genome

Nature · 2012 · 18.9K citations · Full text

Chromatin, Dna Sequencing, Dna +12

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

Ron Edgar · Nucleic Acids Research · 2002 · 13.5K citations · Full text

Engineering, Genetics, Molecular Biology +18