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Conformational transitions and geometry differences between low‐energy conformers of <i>N</i>‐acetyl‐<i>N</i>′‐methyl alanineamide: An <i>ab initio</i> study at the 4‐21G level with gradient relaxed geometries
76
Citations
22
References
1984
Year
Biomolecular Structure PredictionConformational Energy SurfaceMolecular BiologyComputational ChemistryChemistryAbstract Energy PathwaysSpectra-structure CorrelationGradient Relaxed GeometriesProtein X-ray CrystallographyComputational BiochemistryBiophysicsProtein ChemistryBiochemistryψ CorrelationConformational StudyQuantum ChemistrySolution Nmr SpectroscopyMolecular ModelingStructural BiologyAb-initio MethodConformational TransitionsNatural SciencesMolecular BiophysicsMedicineGeometry Differences
Abstract Energy pathways between the α R , β′, C , and β‐regions of the conformational energy surface of N ‐acetyl‐ N ′‐methylalanyl amide were obtained by SCF ab initio calculations on the 4‐21G level, with gradient geometry optimization at each point. The calculations indicate that no barrier exists at this computational level between α R and β′. The variation of geometry (bond distances and bond angles) with conformation is analyzed in detail, and the most important geometrical parameters that should be treated as variables in both empirical energy calculations and in the fitting of polypeptide chains in proteins by x‐ray methods are identified. In addition to the ϕ,ψ correlation discussed previously for the helical state, a correlation of these dihedral angles in the β‐region is described.
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