Investigation of molluscan phylogeny using large-subunit and small-subunit nuclear rRNA sequences

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

Julie Thompson, Desmond G. Higgins, Toby J. Gibson · Nucleic Acids Research · 1994 · 64.4K citations · Full text

MODELTEST: testing the model of DNA substitution.

David Posada, Keith A. Crandall · Bioinformatics · 1998 · 20K citations

PAUP^* : Phylogenetic Analysis Using Parsimony (and other methods) 4.0b8

David L. Swofford · 2001 · 12.8K citations

Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees.

Koichiro Tamura, M Nei · Molecular Biology and Evolution · 1993 · 11.4K citations · Full text

Primatology, Dna, Genetics +21

Multiple Comparisons of Log-Likelihoods with Applications to Phylogenetic Inference

Hidetoshi Shimodaira, M. Hasegawa · Molecular Biology and Evolution · 1999 · 4.3K citations · Full text

Biology, Phylogenetics, Maximum-likelihood Method +15