Journal of the American Chemical Society · 2013 · 93 citations · 37 references
Protein ChemistryProtein AssemblyBiochemistryProtein FoldingNatural SciencesPeptoidCarbohydrate-aromatic Packing InteractionsCh-π InteractionsEnergetic BasisMolecular RecognitionMedicineCarbohydrate-aromatic InteractionsCarbohydrate-protein InteractionBiophysics
Carbohydrate-aromatic interactions mediate many biological processes. However, the structure-energy relationships underpinning direct carbohydrate-aromatic packing interactions in aqueous solution have been difficult to assess experimentally and remain elusive. Here, we determine the structures and folding energetics of chemically synthesized glycoproteins to quantify the contributions of the hydrophobic effect and CH-π interactions to carbohydrate-aromatic packing interactions in proteins. We find that the hydrophobic effect contributes significantly to protein-carbohydrate interactions. Interactions between carbohydrates and aromatic amino acid side chains, however, are supplemented by CH-π interactions. The strengths of experimentally determined carbohydrate CH-π interactions do not correlate with the electrostatic properties of the involved aromatic residues, suggesting that the electrostatic component of CH-π interactions in aqueous solution is small. Thus, tight binding of carbohydrates and aromatic residues is driven by the hydrophobic effect and CH-π interactions featuring a dominating dispersive component.
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The Amber biomolecular simulation programs
David A. Case, Thomas E. Cheatham, Tom Darden et al. · Journal of Computational Chemistry · 2005 · 9.4K citations · Full text
G. Ya. Wiederschain · Biochemistry (Moscow) · 2009 · 4.1K citations · Full text
Carbohydrate-Protein Interactions: Basis of Glycobiology
Y. C. Lee, R. T. Lee · Accounts of Chemical Research · 1995 · 1.3K citations