Physical Review Letters · 2009 · 104 citations · 22 references
Natural SciencesChemistryBiomolecular ModelingComputational ChemistryMolecular PhysicsComputational Structural BiologyDensity Functional TheoryEnergy MinimizationForce FieldsMolecular MechanicsProtein StructureBiomolecular Force FieldsClassical Force FieldsCorrelation FunctionsEffective Interaction PotentialsMany-body CorrelationsMany-body DynamicsMany-body Force FieldsMany-body Interactions
We employ a basis set representation for classical force fields to derive an original system of exact integral equations relating each mode in the force field to an associated set of structural correlation functions. This generalized Yvon-Born-Green theory provides a framework for interpreting complex many-body correlations and also for variationally determining optimal interaction potentials for proteins and other complex molecules directly from structural correlation functions.
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GROMACS: Fast, flexible, and free
David van der Spoel, Erik Lindahl, Berk Hess et al. · Journal of Computational Chemistry · 2005 · 19.1K citations
Natural Sciences, Chemistry, Physics +17