ppiPre: predicting protein-protein interactions by combining heterogeneous features

Gene Ontology: tool for the unification of biology

Michael Ashburner, Catherine A. Ball, Judith A. Blake et al. · Nature Genetics · 2000 · 43.3K citations · Full text

Functional Genomics, Engineering, Bioinformatics Database +11

KEGG: Kyoto Encyclopedia of Genes and Genomes

Minoru Kanehisa · Nucleic Acids Research · 2000 · 37.5K citations · Full text

KEGG: Kyoto Encyclopedia of Genes and Genomes

Hiroyuki Ogata, Susumu Goto, Kazushige Sato et al. · Nucleic Acids Research · 1999 · 32.2K citations · Full text

Genetics, Molecular Biology, Genomics +18

The igraph software package for complex network research

Gábor Csárdi, Tamás Nepusz · Medical Entomology and Zoology · 2006 · 10.4K citations

Igraph Software Package, Network Science, Graph Theory +8

Functional organization of the yeast proteome by systematic analysis of protein complexes

Anne‐Claude Gavin, Markus Bösche, Roland Krause et al. · Nature · 2002 · 4.8K citations · Full text

Yeast Proteome, Biochemistry, Protein Folding +10