Phylogenomic analyses and improved resolution of Cetartiodactyla

MRBAYES: Bayesian inference of phylogenetic trees

John P. Huelsenbeck, Fredrik Ronquist · Bioinformatics · 2001 · 22.2K citations · Full text

Life Sciences, Bioinformatics, Biology +14

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

Alexandros Stamatakis · Bioinformatics · 2006 · 15.9K citations · Full text

Life Sciences, Bioinformatics, High-performance Computing +17

BEAST: Bayesian evolutionary analysis by sampling trees

Alexei J. Drummond, Andrew Rambaut · BMC Evolutionary Biology · 2007 · 13.1K citations · Full text

Life Sciences, Bioinformatics, Evolutionary Biology +16

Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis

José Castresana · Molecular Biology and Evolution · 2000 · 10.8K citations · Full text

Life Sciences, Bioinformatics, Biology +14

MAFFT version 5: improvement in accuracy of multiple sequence alignment

Kazutaka Katoh · Nucleic Acids Research · 2005 · 5K citations · Full text

Life Sciences, Bioinformatics, Genomics +13